miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST006644
species:
Xenopus laevis
miRNA family:
miR-427
source:
miRNEST
Taxonomy by NCBI:
Xenopus laevis
Xenopus
Xenopus
Xenopodinae
Pipidae
Pipoidea
Mesobatrachia
Anura
Batrachia
Amphibia
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAAAGTGCTTTCTGTTTTGGG
miRNA*
CAAAACTAAGCTCTCTCTT
mismatches:
3
bulges:
2
View larger
pre-miRNA
TTGATATCACC
CAAAACTAAGCTCTCTCTT
GTGTTCTCTTGATGGTCAGAAAGTGCTTCCTGTTTTGGGAGTTATCGATTGGAGAATTCAACTTTGCAGC
AATGGGATGACTTATATTTGTTTCAGACTGATTATGTAGCACCCAAAACGGGGCTCTCTCTTGTGACTGAATTATGATGA
GAAAGTGCTTTCTGTTTTGG
G
CGTTCTGG
dot-bracket secondary structure
.........((
((((((.((((.((.((((
(...((...(((((((((((.((.((..(((((((((((.(((((.((((((..........((((.(((
((.((.....)).....))))).))))))))))..))))).))))))))))))).)).))...)))))..)))).)))))
)).)).))))...)))))))
)
........
SIMILARITIES
miRBase
xla-mir-427
:
1e-32
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
Identical with:
xla-mir-427
from miRBase (
MNEST025671
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record