ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-1
source: miRNEST
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTTAAGAAGTATGTA miRNA* CATACTTCTTTATATGCCCATA mismatches: 3 bulges: 1 |
pre-miRNA
CTTTGATATCGGTCTTTAGGGCACATACTTCTTTATATGCCCATACTGAATGCCAATGCTATGGAATGTTAAGAAGTATGTAACCTAAGGTTGCCTTTTC
AG
dot-bracket secondary structure
...(((....((((((((((..(((((((((((.((((..(((((.(..........).))))).)))).)))))))))))..)))))))..)))...))
).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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CTTTGATATCGGTCTTTAGGGCACATACTTCTTTATATGCCCATACTGAATGCCAATGCTATGGAATGTTAAGAAGTATGTAACCTAAGGTTGCCTTTTC
AG
dot-bracket secondary structure
...(((....((((((((((..(((((((((((.((((..(((((.(..........).))))).)))).)))))))))))..)))))))..)))...))
).
SIMILARITIES| miRBase xla-mir-1b: 2e-27 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 3e-32 | most similar mature miRNAs |
Identical with: xla-mir-1b from miRBase (MNEST025654) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
