ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-23
source: miRNEST
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCACATTGCCAGGGATTT miRNA* ATTCCTGGAGATGGGATTT mismatches: 2 bulges: 0 |
pre-miRNA
CTTCTTGCTGCCGACAGCGGGGGATTCCTGGAGATGGGATTTTATTTTTGCAGCCAATAAATCACATTGCCAGGGATTTCCAACTGTCGGCTGCCCGGT
dot-bracket secondary structure
......((.((((((((..((((((((((((.((((.(((((.....(((....))).))))).)))).))))))))))))..)))))))).)).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTCTTGCTGCCGACAGCGGGGGATTCCTGGAGATGGGATTTTATTTTTGCAGCCAATAAATCACATTGCCAGGGATTTCCAACTGTCGGCTGCCCGGT
dot-bracket secondary structure
......((.((((((((..((((((((((((.((((.(((((.....(((....))).))))).)))).))))))))))))..)))))))).)).....
SIMILARITIES| miRBase xla-mir-23a: 7e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-23: 0.00000009 | most similar mature miRNAs |
Identical with: xla-mir-23a from miRBase (MNEST025659) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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