ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-1422
source: miRNEST
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGAAAACTATGTGTTGTGC miRNA* CAAAATAAAGATTTCCATTA mismatches: 3 bulges: 1 |
pre-miRNA
CTGGAGAACTGAAACTAAGAAATGGAAAACTATGTGTTGTGCAATTCAGCCTAAATATGTGCCGTGTACTTTGACTTCAATCTGTTTTATTCTGTAGCAT
GCATCATTCCATTGCCAAAATAAAGATTTCCATTAACTTAAAAAAAAAAAAAA
dot-bracket secondary structure
...............((((.((((((((.((.(((.(((.(((((...........((((((.((((((...((................)).))).)))
))).)))...)))))))).))).)).))))))))..)))).............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTGGAGAACTGAAACTAAGAAATGGAAAACTATGTGTTGTGCAATTCAGCCTAAATATGTGCCGTGTACTTTGACTTCAATCTGTTTTATTCTGTAGCAT
GCATCATTCCATTGCCAAAATAAAGATTTCCATTAACTTAAAAAAAAAAAAAA
dot-bracket secondary structure
...............((((.((((((((.((.(((.(((.(((((...........((((((.((((((...((................)).))).)))
))).)))...)))))))).))).)).))))))))..)))).............
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
