ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: miR-1621
source: miRNEST
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCGGCTGCCTCTGTGGCACC miRNA* GCCATAGAAATCATTCTGTGT mismatches: 5 bulges: 1 |
pre-miRNA
TTCCATCGTCCTGACTGCCAGTGCCATAGAAATCATTCTGTGTGTTGTACAAGTTGTCAACGGCCTCGCCGGCTGCCTCTGTGGCACCTGCCAGAAAAAA
TAAACGA
dot-bracket secondary structure
...........((((.((..(((((((((((....)))))))....))))..)).)))).(((((.....)))))......((((....)))).......
.......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTCCATCGTCCTGACTGCCAGTGCCATAGAAATCATTCTGTGTGTTGTACAAGTTGTCAACGGCCTCGCCGGCTGCCTCTGTGGCACCTGCCAGAAAAAA
TAAACGA
dot-bracket secondary structure
...........((((.((..(((((((((((....)))))))....))))..)).)))).(((((.....)))))......((((....)))).......
.......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q5R6Z4|T4S4_PONAB: 0.0002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
