ABOUT THIS RECORDspecies: Oryzias latipes
miRNA family: miR-1
source: miRNEST
Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACATATTTCTTTACATTTCA miRNA* ATGAGAAAAAATGTGTTTA mismatches: 5 bulges: 0 |
pre-miRNA
AGTAACAAAGTAATGAGAAAAAATGTGTTTAATTTTACATATTTCTTTACATTTCACAGAAGAAA
dot-bracket secondary structure
.........((((((.(((.((((((((........)))))))).))).))))..))........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGTAACAAAGTAATGAGAAAAAATGTGTTTAATTTTACATATTTCTTTACATTTCACAGAAGAAA
dot-bracket secondary structure
.........((((((.(((.((((((((........)))))))).))).))))..))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
