ABOUT THIS RECORDspecies: Oryzias latipes
miRNA family: mir-144
source: miRNEST
Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACAGTATAGATGATGTACTA miRNA* GGATATCATCTTATACTGTAAG mismatches: 2 bulges: 1 |
pre-miRNA
GAGCCCTGGACAGGATATCATCTTATACTGTAAGTTTAATAAAGAGACACTACAGTATAGATGATGTACTATCCAGGGTT
dot-bracket secondary structure
.(((((((((.((.(((((((((.((((((((.((((.......))))..))))))))))))))))).)).)))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGCCCTGGACAGGATATCATCTTATACTGTAAGTTTAATAAAGAGACACTACAGTATAGATGATGTACTATCCAGGGTT
dot-bracket secondary structure
.(((((((((.((.(((((((((.((((((((.((((.......))))..))))))))))))))))).)).)))))))))
SIMILARITIES| miRBase tni-mir-144: 3e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-144: 6e-39 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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