ABOUT THIS RECORDspecies: Oryzias latipes
miRNA family: mir-202
source: miRNEST
Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCTATGCATATACTTCTTT miRNA* AGAGGCATAAGGCATGGGAAAA mismatches: 2 bulges: 1 |
pre-miRNA
CGCTGTTCCTTTTTCCTATGCATATACTTCTTTGACATGTAACTTTAAAGAGGCATAAGGCATGGGAAAATGGGGCTGC
dot-bracket secondary structure
.((.(((((.(((((((((((.(((.(((((((((.........))))))))).)))..))))))))))).))))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGCTGTTCCTTTTTCCTATGCATATACTTCTTTGACATGTAACTTTAAAGAGGCATAAGGCATGGGAAAATGGGGCTGC
dot-bracket secondary structure
.((.(((((.(((((((((((.(((.(((((((((.........))))))))).)))..))))))))))).))))).))
SIMILARITIES| miRBase dre-mir-202: 1e-24 PMRD no hits microPC no hits | UniProt no hits RFAM mir-202: 2e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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