ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-199
source: miRNEST
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGTAGTCTGCACATTGGTT miRNA* CCAGTGTTCAGACTACCTGTTC mismatches: 3 bulges: 1 |
pre-miRNA
CCGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCTGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGAAAGC
dot-bracket secondary structure
.......((((((((.(((...(((((((.((((((((.(((.(((.......)))....))))))))))).)))))))...))).))))..))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CCGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCTGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGAAAGC
dot-bracket secondary structure
.......((((((((.(((...(((((((.((((((((.(((.(((.......)))....))))))))))).)))))))...))).))))..))))....
SIMILARITIES| miRBase gga-mir-199-2: 5e-52 PMRD no hits microPC no hits | UniProt no hits RFAM mir-199: 4e-50 | most similar mature miRNAs |
Identical with: tgu-mir-199-2 from miRBase (MNEST026496) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
