ABOUT THIS RECORDspecies: Salmo salar
miRNA family: mir-1827
source: miRNEST
Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGGTAGTAGATTGAATAGT miRNA* TATACAATCTACTGTCTTTCC mismatches: 1 bulges: 0 |
pre-miRNA
CGCTGGGGGAGGTAGTAGATTGAATAGTTGTGGGGTATATGTCCTCCCTCTGAGATAACTATACAATCTACTGTCTTTCCTAAG
dot-bracket secondary structure
...(((((((((((((((((((.((((((((((((..........)))).....)))))))).)))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CGCTGGGGGAGGTAGTAGATTGAATAGTTGTGGGGTATATGTCCTCCCTCTGAGATAACTATACAATCTACTGTCTTTCCTAAG
dot-bracket secondary structure
...(((((((((((((((((((.((((((((((((..........)))).....)))))))).)))))))))))))))))))..
SIMILARITIES| miRBase tgu-let-7e: 2e-23 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 9e-29 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
