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ABOUT THIS RECORD

ID: MNEST006861
species: Salmo salar
miRNA family: mir-1827
source: miRNEST

Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAGGTAGTAGATTGAATAGT

miRNA*
TATACAATCTACTGTCTTTCC

mismatches: 1
bulges: 0

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pre-miRNA
CGCTGGGGGAGGTAGTAGATTGAATAGTTGTGGGGTATATGTCCTCCCTCTGAGATAACTATACAATCTACTGTCTTTCCTAAG

dot-bracket secondary structure
...(((((((((((((((((((.((((((((((((..........)))).....)))))))).)))))))))))))))))))..


SIMILARITIES
miRBase tgu-let-7e: 2e-23

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 9e-29
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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