ABOUT THIS RECORDspecies: Salmo salar
miRNA family: mir-132
source: miRNEST
Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCTTGGCTTTAGACTGCTTA miRNA* ACAGTCTACAGTCATGGCTA mismatches: 3 bulges: 1 |
pre-miRNA
CCCCTGACTGCCAGAGCATCAGCACCTTGGCTTTAGACTGCTTACTGCTTTAAAAAAAAAAGTCTCACAGTTACAGTAACAGTCTACAGTCATGGCTACTG
ATGCCTGGCAACTCGC
dot-bracket secondary structure
).......((((((.(((((((..((.(((((.(((((((.((((((..........................))))))))))))).))))).))...)))
))))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCCCTGACTGCCAGAGCATCAGCACCTTGGCTTTAGACTGCTTACTGCTTTAAAAAAAAAAGTCTCACAGTTACAGTAACAGTCTACAGTCATGGCTACTG
ATGCCTGGCAACTCGC
dot-bracket secondary structure
).......((((((.(((((((..((.(((((.(((((((.((((((..........................))))))))))))).))))).))...)))
))))))))))......
SIMILARITIES| miRBase tni-mir-212: 4.0E-13 PMRD no hits microPC no hits | UniProt no hits RFAM 2mir-132: 5.0E-19 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
