ABOUT THIS RECORDspecies: Canis lupus familiaris
miRNA family: mir-1195
source: miRNEST
Taxonomy by NCBI:
Canis lupus familiaris Canis lupus Canis Canidae Caniformia Carnivora Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGTTTGAGGCCAGCCTGAT miRNA* TAGCTTGGTACCGAGCTCGGA mismatches: 4 bulges: 0 |
pre-miRNA
CTTAGCTTGGTACCGAGCTCGGATCCCTAGTCCAGTGTGGTGGAATTCGGCACGAGGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGTCAGAGGCAG
CTGGATTTCTGAGTTTGAGGCCAGCCTGATCTATAAAGT
dot-bracket secondary structure
.((((.(((((..((((((((((.....(((((((((((((....((((...))))....)).)))((((((..(((((.....)))))...)))))).)
)))))))))))))))))..))))).))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTAGCTTGGTACCGAGCTCGGATCCCTAGTCCAGTGTGGTGGAATTCGGCACGAGGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGTCAGAGGCAG
CTGGATTTCTGAGTTTGAGGCCAGCCTGATCTATAAAGT
dot-bracket secondary structure
.((((.(((((..((((((((((.....(((((((((((((....((((...))))....)).)))((((((..(((((.....)))))...)))))).)
)))))))))))))))))..))))).))))..........
SIMILARITIES| miRBase mmu-mir-3470b: 0.000000000007 PMRD ptc-miRf12412-akr: 0.0001 microPC no hits | UniProt no hits RFAM Metazoa_SRP: 0.000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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