ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1023
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACACTCTCTCCATTTCTCTAC miRNA* GGGGTGTGTAGGAGGAGGTGGCC mismatches: 4 bulges: 2 |
pre-miRNA
AGTTTTGGTCGGATGTTGCGGTGGGGTGTGTAGGAGGAGGTGGCCTTGGGGGTTGACGAGGGAGCGATTGGACCACCTTGCAGTTTCATGGCACACTCTC
TCCATTTCTCTACCGTTCATGCAGCGGTTGAT
dot-bracket secondary structure
.......(((((.(((.(((((((((...((.(((((.(((((((...(((((((.(((((..............))))))))))))..))).)))).))
)))))..)))))))))....)))....)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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deep sequencing data evidence
AGTTTTGGTCGGATGTTGCGGTGGGGTGTGTAGGAGGAGGTGGCCTTGGGGGTTGACGAGGGAGCGATTGGACCACCTTGCAGTTTCATGGCACACTCTC
TCCATTTCTCTACCGTTCATGCAGCGGTTGAT
dot-bracket secondary structure
.......(((((.(((.(((((((((...((.(((((.(((((((...(((((((.(((((..............))))))))))))..))).)))).))
)))))..)))))))))....)))....)))))
SIMILARITIES| miRBase ppt-MIR1023a: 9e-36 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1023: 7e-34 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
deep sequencing data evidence
