ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1065
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGTCTCTGACTTCTCGCAG miRNA* GCGGGAAATCAGAGACAGTCG mismatches: 3 bulges: 0 |
pre-miRNA
GTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCAGAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCACTAGGCAAA
AACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTCTAAT
dot-bracket secondary structure
.....((..(((((((((..(((.((((((((.((((((((...(((((....(((((((((.(((..((((((...(.((((((..((((((((((((.
....))))..)))))).)))))))).))))))).))).))))))))).)))))...)))))))).)))))))).)))..)))))))))..))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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deep sequencing data evidence
GTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCAGAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCACTAGGCAAA
AACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTCTAAT
dot-bracket secondary structure
.....((..(((((((((..(((.((((((((.((((((((...(((((....(((((((((.(((..((((((...(.((((((..((((((((((((.
....))))..)))))).)))))))).))))))).))).))))))))).)))))...)))))))).)))))))).)))..)))))))))..))....
SIMILARITIES| miRBase ppt-MIR1065: 6e-109 PMRD ppt-miR1065: 6e-109 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ppt-MIR1065 from miRBase (MNEST039664) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
