ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1033
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACGGGTCGTGATGGGCACT miRNA* TGCTCAACACGATCTGTCAAC mismatches: 3 bulges: 0 |
pre-miRNA
GGGAGATGATGGGATGTTGGGCATGCTCAACACGATCTGTCAACATTCTAGAGTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGG
dot-bracket secondary structure
)....((((..((((((((((..((((((.(((((((((((((.((........)).))))))))))))).))))))..))))))))))...))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GGGAGATGATGGGATGTTGGGCATGCTCAACACGATCTGTCAACATTCTAGAGTATATTGACGGGTCGTGATGGGCACTCTCAATGTCCACTTCATGG
dot-bracket secondary structure
)....((((..((((((((((..((((((.(((((((((((((.((........)).))))))))))))).))))))..))))))))))...))))..
SIMILARITIES| miRBase ppt-MIR1033b: 3.0E-50 PMRD ppt-miR1033b: 3.0E-50 microPC miR1033: 9.0E-26 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ppt-miR1033b from PMRD (MNEST051472), miR1033 from microPC , ppt-MIR1033b from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
