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ABOUT THIS RECORD
ID:
MNEST006969
species:
Physcomitrella patens
miRNA family:
MIRf502
source:
miRNEST
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATGGTCGTGATCATGGTTG
miRNA*
GTCGTGACTGTGACTATGATC
mismatches:
1
bulges:
0
View larger
pre-miRNA
ACCCCTGGATCGTGCACATGG
TCATGGTCGTGATCATGGTTG
TGACCACACTCAGCAGTATGAACATGATCCTCCTCACACTTATGCGTGTGTTCGTGGT
CGTGGTCATGGTCGTGGTCATG
GTCGTGACTGTGACTATGATC
ATGTGCATGTGCATGTGC
dot-bracket secondary structure
.((...))..(((((((((((
(((((((((((.(((((((((
((((((((((.......((((.(((((((.....(((((......))))).....)))
)))).))))))).)))))))))
))))))).)))))))))))))
))))))))).((....))
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf11092-akr
:
0.00000003
microPC
no hits
UniProt
no hits
RFAM
mir-598: 0.0006
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
degradome data
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