ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR902
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGATGCAGATTCTTCATCT miRNA* ACGAAGGTCTGCATCATAGC mismatches: 1 bulges: 1 |
pre-miRNA
TCCTTCCTCTAGCCTATGATGCAGATTCTTCATCTGTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGC
dot-bracket secondary structure
..((((((((...(((((((((((((.((((.(((((((((((((((....)))))).))).)))))).)))))))))))))))))...)))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
TCCTTCCTCTAGCCTATGATGCAGATTCTTCATCTGTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGC
dot-bracket secondary structure
..((((((((...(((((((((((((.((((.(((((((((((((((....)))))).))).)))))).)))))))))))))))))...)))))))).
SIMILARITIES| miRBase ppt-MIR902b: 8e-51 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
