ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR902
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGATGCAGATTCTTCATCT miRNA* ACGAAGGTCTGCATCATAGT mismatches: 1 bulges: 1 |
pre-miRNA
TTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTCTGCATCATAGTCAAGAGGA
dot-bracket secondary structure
.(((......(((((((((((((.((((.(((((...((((((.(((...)))...))))))...))))).)))))))))))))))))......)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
TTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTCTGCATCATAGTCAAGAGGA
dot-bracket secondary structure
.(((......(((((((((((((.((((.(((((...((((((.(((...)))...))))))...))))).)))))))))))))))))......)))
SIMILARITIES| miRBase ppt-MIR902g: 3e-50 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ppt-MIR902g from miRBase (MNEST039557) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
