ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR902
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGAAGGTCTGCATCATAGTC miRNA* CTATGATGCAGATTCTTCATCT mismatches: 3 bulges: 1 |
pre-miRNA
GGTAGCAGGTTTGTTCATTTTCTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTC
TGCATCATAGTCAAGAGGAATGAAAATACATTATAGATTAT
dot-bracket secondary structure
.......(((((((..((((((((((......(((((((((((((.((((.(((((...((((((.(((...)))...))))))...))))).)))))))
))))))))))......)))).)))))).....)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTAGCAGGTTTGTTCATTTTCTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTAGCTGAATCTGCGTCAGTGTTTCAGTGTTACAGACGAAGGTC
TGCATCATAGTCAAGAGGAATGAAAATACATTATAGATTAT
dot-bracket secondary structure
.......(((((((..((((((((((......(((((((((((((.((((.(((((...((((((.(((...)))...))))))...))))).)))))))
))))))))))......)))).)))))).....)))))))..
SIMILARITIES| miRBase ppt-MIR902g: 3e-76 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ppt-MIR902g from miRBase (MNEST039557) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
