miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

ABOUT THIS RECORD

ID: MNEST006975
species: Physcomitrella patens
miRNA family: MIR1171
source: miRNEST

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGGAGTGGAGTGGAGTGGATG

miRNA*
TCTTTTTCCTTCTTCACTTCACG

mismatches: 4
bulges: 2

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pre-miRNA
ACTTCGTTCGTGGAGTGGAGTGGAGTGGATGCTTCCCCTCTTTTTCCTTCTTCACTTCACGCACTTCG

dot-bracket secondary structure
.....((.((((((((((((.((((.(((.........)))..))))..)))))))))))).))....

SIMILARITIES

miRBase cre-MIR1171: 0.0002

PMRD cre-miR1171: 0.0002

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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