ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1219
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCCTGCCTCTCACTAGCTT miRNA* GCTATTGGTGGTCAGGAATAG mismatches: 3 bulges: 2 |
pre-miRNA
GGGTGAAGTGTGGACGATGGAGAGTCAGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCCTCCCTAAATTTTAGTCTGGGAGGGAAGGAGCTATTGGT
GGTCAGGAATAGCGCACCCTTCATTTATCCACACTTCAAC
dot-bracket secondary structure
...(((((((((((.(((((((.((..((((.((((((((..(((.(((((((.((((((((...((((...))))...)))))))).))))))).))).
)).)))))).)).)))).)))))))..)))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GGGTGAAGTGTGGACGATGGAGAGTCAGCCTCTTCCTGCCTCTCACTAGCTTCATCCCTTCCTCCCTAAATTTTAGTCTGGGAGGGAAGGAGCTATTGGT
GGTCAGGAATAGCGCACCCTTCATTTATCCACACTTCAAC
dot-bracket secondary structure
...(((((((((((.(((((((.((..((((.((((((((..(((.(((((((.((((((((...((((...))))...)))))))).))))))).))).
)).)))))).)).)))).)))))))..)))))))))))..
SIMILARITIES| miRBase ppt-MIR1219a: 1e-72 PMRD ppt-miR1219a: 1e-72 microPC miR1219: 4e-38 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR1219 from microPC (MNEST045444) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
