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ABOUT THIS RECORD

ID: MNEST006982
species: Physcomitrella patens
miRNA family: MIR536
source: miRNEST

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCGTGCCAAGCTGTGTGCAA

miRNA*
GCCGCAGTTTGGCACGAAGC

mismatches: 2
bulges: 1

View larger
pre-miRNA
CGTCCCTTGGAAGCCGCAGTTTGGCACGAAGCCCTTTCTCCTGCCGCTACTGTTTTGTTAGTCAGGTTTGCAGCGTGTCTCGATATAGTGGTGTGCTTCC
GTTGCTATCCTTTCCCTCCAGGTAGGAATTCTGTGGCAAACTAGTGGTTGGTTCGCTTATCAAGTTGCAGTCCTTCATACCTTGATTTTGAATTACTGCA
GTCACACCCTTCTTGTCGGCAGTTTTTTTTTTTTTTTGTGTGTCCTACCGACTGCACTGACTGCAGAAAGTCGAAGCAATGGAGGTGTCGTTGCATTTTC
CTCATAGTTTTGCTAGCTTCTACTTCTGGGTTGATGTTGAACCCACTCCACCCACTTGTAGCGGAAAGATGTTAGAATTTCGTGCCAAGCTGTGTGCAAC
CAAGGGGT


dot-bracket secondary structure
..((((((((..(((((((((((((((((((..((.(((....(((((((.((...((((((.(((..(((((((..(.(((......))).).((((((
((((((.((((..((.....)).))))....((.(((.(((((.....))))).)))...))...(((((((...(((((...((....(((..(((((.
...(((.......)))..)))))..)))....))...))))).......))))))).(((((......))))).))))))))))))..)))))))....)
)).........))))))....))...(((((.((.((.......)))).)))))...)))))))..)))....))..))))))))))))))))).))..)
))))))).



SIMILARITIES
miRBase no hits

PMRD ppt-miR536d: 0

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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