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ABOUT THIS RECORD
ID:
MNEST006982
species:
Physcomitrella patens
miRNA family:
MIR536
source:
miRNEST
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCGTGCCAAGCTGTGTGCAA
miRNA*
GCCGCAGTTTGGCACGAAGC
mismatches:
2
bulges:
1
View larger
pre-miRNA
CGTCCCTTGGAA
GCCGCAGTTTGGCACGAAGC
CCTTTCTCCTGCCGCTACTGTTTTGTTAGTCAGGTTTGCAGCGTGTCTCGATATAGTGGTGTGCTTCC
GTTGCTATCCTTTCCCTCCAGGTAGGAATTCTGTGGCAAACTAGTGGTTGGTTCGCTTATCAAGTTGCAGTCCTTCATACCTTGATTTTGAATTACTGCA
GTCACACCCTTCTTGTCGGCAGTTTTTTTTTTTTTTTGTGTGTCCTACCGACTGCACTGACTGCAGAAAGTCGAAGCAATGGAGGTGTCGTTGCATTTTC
CTCATAGTTTTGCTAGCTTCTACTTCTGGGTTGATGTTGAACCCACTCCACCCACTTGTAGCGGAAAGATGTTAGAAT
TTCGTGCCAAGCTGTGTGCAA
C
CAAGGGGT
dot-bracket secondary structure
..((((((((..
(((((((((((((((((((.
.((.(((....(((((((.((...((((((.(((..(((((((..(.(((......))).).((((((
((((((.((((..((.....)).))))....((.(((.(((((.....))))).)))...))...(((((((...(((((...((....(((..(((((.
...(((.......)))..)))))..)))....))...))))).......))))))).(((((......))))).))))))))))))..)))))))....)
)).........))))))....))...(((((.((.((.......)))).)))))...)))))))..)))....))..)
)))))))))))))))).))..
)
))))))).
SIMILARITIES
miRBase
no hits
PMRD
ppt-miR536d
:
0
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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