ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1064
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATTCTGAGAATAATCATCCG miRNA* GGTGATTATTCTCAGAGTTCC mismatches: 1 bulges: 0 |
pre-miRNA
GGCAATCAACGATTTCGAGGGCATTCTGAGAATAATCATCCGAATGCAGCAGCCCGGGCGGGTGATTATTCTCAGAGTTCCCAAGGGAGCGTGGATCGA
dot-bracket secondary structure
....(((.(((.((((..(((.((((((((((((((((((((...((....)).....)))))))))))))))))))).)))..)))).))).)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGCAATCAACGATTTCGAGGGCATTCTGAGAATAATCATCCGAATGCAGCAGCCCGGGCGGGTGATTATTCTCAGAGTTCCCAAGGGAGCGTGGATCGA
dot-bracket secondary structure
....(((.(((.((((..(((.((((((((((((((((((((...((....)).....)))))))))))))))))))).)))..)))).))).)))...
SIMILARITIES| miRBase ppt-MIR1064: 2e-51 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ppt-MIR1064 from miRBase (MNEST039663) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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