ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR898
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCTGTGCACTACTTAGTAC miRNA* GCTAGGCAGTGCACAGCGATA mismatches: 1 bulges: 0 |
pre-miRNA
ACACCAAACTCTCTTGTTTGTTTCCGGCGTATTGCTGTGCACTACTTAGTACACGCGTATCGGTTTGCACTCCAGATGTAGCAATTGAAAACGAAGATAT
TCCTGGAAAGTTTGCAACCGCGTGGGTGCTAGGCAGTGCACAGCGATATGCTGGGTATGGACAGCTACTTTTGAAC
dot-bracket secondary structure
....((((.....((((((((.(((((((((((((((((((((.((((((((.(((((...((((.(((.(((((..(((.................)))
..))))).....)))))))))))).)))))))).))))))))))))))))))))).)))))))).....))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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deep sequencing data evidence
ACACCAAACTCTCTTGTTTGTTTCCGGCGTATTGCTGTGCACTACTTAGTACACGCGTATCGGTTTGCACTCCAGATGTAGCAATTGAAAACGAAGATAT
TCCTGGAAAGTTTGCAACCGCGTGGGTGCTAGGCAGTGCACAGCGATATGCTGGGTATGGACAGCTACTTTTGAAC
dot-bracket secondary structure
....((((.....((((((((.(((((((((((((((((((((.((((((((.(((((...((((.(((.(((((..(((.................)))
..))))).....)))))))))))).)))))))).))))))))))))))))))))).)))))))).....))))...
SIMILARITIES| miRBase ppt-MIR898a: 4e-97 PMRD ppt-miR898a: 4e-97 microPC miR898: 1e-60 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR898 from microPC (MNEST045986) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
