ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1053
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTACTTTGACATAGCCCACT miRNA* TGGGTTATCTCAAAGTGGACTT mismatches: 3 bulges: 0 |
pre-miRNA
CAGCCTGTGAGATGGGTTATCTCAAAGTGGACTTTCTCTCTGTCTTGGCTTGAACTCTACTTTGACATAGCCCACTTCAAAGGTA
dot-bracket secondary structure
..((((.((((.((((((((.((((((((((..(((.....((....))..))).)))))))))).)))))))).)))).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGCCTGTGAGATGGGTTATCTCAAAGTGGACTTTCTCTCTGTCTTGGCTTGAACTCTACTTTGACATAGCCCACTTCAAAGGTA
dot-bracket secondary structure
..((((.((((.((((((((.((((((((((..(((.....((....))..))).)))))))))).)))))))).)))).)))).
SIMILARITIES| miRBase ppt-MIR1053: 4e-43 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ppt-MIR1053 from miRBase (MNEST039643) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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