ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR477
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCCCTCAAAGGCTTCCA miRNA* GAAGCCTTCGAGGGAGATG mismatches: 2 bulges: 0 |
pre-miRNA
GTTTGTTTTTCTCCCTCAAAGGCTTCCAACAACAGGAGGGTACAATTCCATTGTGGTTATAACCCATAGTTGAGGTGTTTTTGCTCTCTCTGCTGTCGGA
AGCCTTCGAGGGAGATGAAAGAA
dot-bracket secondary structure
.(((.(((.((((((((.(((((((((.(((.((((((((((((.(((.(((((((.......))))))).))).)))....)))))).))).))).)))
)))))).)))))))).))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
GTTTGTTTTTCTCCCTCAAAGGCTTCCAACAACAGGAGGGTACAATTCCATTGTGGTTATAACCCATAGTTGAGGTGTTTTTGCTCTCTCTGCTGTCGGA
AGCCTTCGAGGGAGATGAAAGAA
dot-bracket secondary structure
.(((.(((.((((((((.(((((((((.(((.((((((((((((.(((.(((((((.......))))))).))).)))....)))))).))).))).)))
)))))).)))))))).))).)))
SIMILARITIES| miRBase ppt-MIR477f: 1e-65 PMRD ppt-miR477f: 1e-65 microPC no hits | UniProt no hits RFAM MIR477: 2e-64 | most similar mature miRNAs |
Identical with: ppt-miR477f from PMRD (MNEST051404) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
