ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR390
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGCTCAGGAGGGATAGCGCC miRNA* TGCAGTCTTTTAGATCTCAA mismatches: 3 bulges: 1 |
pre-miRNA
AAATTCTAGGGGTGCAGTCTTTTAGATCTCAATCAGTGGAGCGACTTTCGTGTCAAGGTGGACGTTGTGACCATCAGTGACCAGTCATGTGCGCTGTCGG
AGATGTATATCCAAACTCTTGTCCTGGATCATACGTTGTTGGAATGAACGCATATTGGACATGAATTGCTGCTGGTAGGTATAATTACAGAGCTCAGGAG
GGATAGCGCCCATCTCAGT
dot-bracket secondary structure
.........((((((.(((((((.((.(((.((((((..(((((..((((((((..(((((.(.....).))))).((((....))))(((((...((((
.((((((((((((...........))))).))))))).))))......)))))....)))))))))))))))))))..(((....))).))).))..)))
)))).))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
AAATTCTAGGGGTGCAGTCTTTTAGATCTCAATCAGTGGAGCGACTTTCGTGTCAAGGTGGACGTTGTGACCATCAGTGACCAGTCATGTGCGCTGTCGG
AGATGTATATCCAAACTCTTGTCCTGGATCATACGTTGTTGGAATGAACGCATATTGGACATGAATTGCTGCTGGTAGGTATAATTACAGAGCTCAGGAG
GGATAGCGCCCATCTCAGT
dot-bracket secondary structure
.........((((((.(((((((.((.(((.((((((..(((((..((((((((..(((((.(.....).))))).((((....))))(((((...((((
.((((((((((((...........))))).))))))).))))......)))))....)))))))))))))))))))..(((....))).))).))..)))
)))).))))))........
SIMILARITIES| miRBase ppt-MIR390c: 5e-17 PMRD ppt-miR390c: 5e-17 microPC miR390: 0.0007 | UniProt no hits RFAM MIR390: 0.0008 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
