ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1222
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAAGGAGTTCATTGGTATA miRNA* TGCTAGTAAACTCCTTCATGC mismatches: 2 bulges: 0 |
pre-miRNA
CTGGTTGTTGTGGGCATTCTTGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATATAAATGCCCACAA
CATGAT
dot-bracket secondary structure
.....(((((((((((((..(((((((((.((((((((((.((((..((((.......)))))))).)))))))))).)))))))))..)))))))))))
))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
CTGGTTGTTGTGGGCATTCTTGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATATAAATGCCCACAA
CATGAT
dot-bracket secondary structure
.....(((((((((((((..(((((((((.((((((((((.((((..((((.......)))))))).)))))))))).)))))))))..)))))))))))
))....
SIMILARITIES| miRBase ppt-MIR1222a: 2e-55 PMRD ppt-miR1222a: 2e-55 microPC miR1222: 3e-32 | UniProt no hits RFAM MIR1222: 3e-54 | most similar mature miRNAs |
Identical with: miR1222 from microPC (MNEST045984) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
