ABOUT THIS RECORDspecies: Ictalurus punctatus
miRNA family: miR-142
source: miRNEST
Taxonomy by NCBI:
Ictalurus punctatus Ictalurus Ictaluridae Siluriformes Siluriphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTGTTTCCTACTTTATGGAT miRNA* CCATAAAGTAGAAAGCACTAC mismatches: 1 bulges: 0 |
pre-miRNA
CTTGGGAAGTACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCCCTCGCCACAGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGTTGGC
TACTG
dot-bracket secondary structure
....((.(((((((((((.(((((((((((((((.(((((((((..................))))))))).))))))))))))))).))))))))..))
).)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTGGGAAGTACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCCCTCGCCACAGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGTTGGC
TACTG
dot-bracket secondary structure
....((.(((((((((((.(((((((((((((((.(((((((((..................))))))))).))))))))))))))).))))))))..))
).)).
SIMILARITIES| miRBase dre-mir-142a: 5e-46 PMRD no hits microPC no hits | UniProt no hits RFAM mir-142: 2e-39 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
