ABOUT THIS RECORDspecies: Ictalurus punctatus
miRNA family: mir-142
source: miRNEST
Taxonomy by NCBI:
Ictalurus punctatus Ictalurus Ictaluridae Siluriformes Siluriphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATAAAGTAGAAAGCACTACT miRNA* TAGTGTTTCCTACTTTATGGA mismatches: 2 bulges: 0 |
pre-miRNA
GGGAAGTACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCCCTCGCCACAGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGTTGGCTA
dot-bracket secondary structure
.((....((((((((.(((((((((((((((.(((((((((..................))))))))).))))))))))))))).))))))))...)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
additional data
download this record
GGGAAGTACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCCCTCGCCACAGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGTTGGCTA
dot-bracket secondary structure
.((....((((((((.(((((((((((((((.(((((((((..................))))))))).))))))))))))))).))))))))...)).
SIMILARITIES| miRBase dre-mir-142a: 5e-46 PMRD no hits microPC no hits | UniProt no hits RFAM mir-142: 2e-39 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
additional data
download this record
