ABOUT THIS RECORDspecies: Ictalurus punctatus
miRNA family: mir-99
source: miRNEST
Taxonomy by NCBI:
Ictalurus punctatus Ictalurus Ictaluridae Siluriformes Siluriphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACCCGTAGATCCGATCTTGT miRNA* AAGCTCGTCTCTATGGGTCCC mismatches: 4 bulges: 0 |
pre-miRNA
CACTTGTCATTAACCCGTAGATCCGATCTTGTGCTACTTAACAACGCAAGCTCGTCTCTATGGGTCCCTGTCTCTG
dot-bracket secondary structure
............(((((((((..(((.((((((...........)))))).)))..)))))))))...........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CACTTGTCATTAACCCGTAGATCCGATCTTGTGCTACTTAACAACGCAAGCTCGTCTCTATGGGTCCCTGTCTCTG
dot-bracket secondary structure
............(((((((((..(((.((((((...........)))))).)))..)))))))))...........
SIMILARITIES| miRBase dre-mir-99-1: 0.000000000004 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 0.00000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
