ABOUT THIS RECORDspecies: Ictalurus punctatus
miRNA family: mir-126
source: miRNEST
Taxonomy by NCBI:
Ictalurus punctatus Ictalurus Ictaluridae Siluriformes Siluriphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGTACCGTGAGTAATAATGC miRNA* ATTATTACTTTTGGTACGCGC mismatches: 3 bulges: 0 |
pre-miRNA
ATATCACAGCTACTGGCCTGCTTCCCAGCTCATTATTACTTTTGGTACGCGCTAGGCCTGCCTCAAGCTCGTACCGTGAGTAATAATGCACTGTGGCAGG
CATTAAGCTACCTGACA
dot-bracket secondary structure
...(((.((((....(((((((...(((..(((((((((((.(((((((.((((((....)))..))).))))))).)))))))))))..))).))))))
)....))))...)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATATCACAGCTACTGGCCTGCTTCCCAGCTCATTATTACTTTTGGTACGCGCTAGGCCTGCCTCAAGCTCGTACCGTGAGTAATAATGCACTGTGGCAGG
CATTAAGCTACCTGACA
dot-bracket secondary structure
...(((.((((....(((((((...(((..(((((((((((.(((((((.((((((....)))..))).))))))).)))))))))))..))).))))))
)....))))...)))..
SIMILARITIES| miRBase dre-mir-126a: 7e-27 PMRD no hits microPC no hits | UniProt no hits RFAM mir-126: 8e-24 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
