ABOUT THIS RECORDspecies: Ictalurus punctatus
miRNA family: miR-3074
source: miRNEST
Taxonomy by NCBI:
Ictalurus punctatus Ictalurus Ictaluridae Siluriformes Siluriphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTCCTGCTGAACTGAGCCAG miRNA* GTAATCAGCTCAGTAGGCACGG mismatches: 4 bulges: 1 |
pre-miRNA
ACCAGACTCCTGTTCCTGCTGAACTGAGCCAGTGTTTCTGCAGTACTGTAATCAGCTCAGTAGGCACGGGAGGCCAG
dot-bracket secondary structure
......(((((((.((((((((.((((..(((((.........)))))...)))).)))))))).))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ACCAGACTCCTGTTCCTGCTGAACTGAGCCAGTGTTTCTGCAGTACTGTAATCAGCTCAGTAGGCACGGGAGGCCAG
dot-bracket secondary structure
......(((((((.((((((((.((((..(((((.........)))))...)))).)))))))).))))))).....
SIMILARITIES| miRBase dre-mir-24-3: 3e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-24: 2e-23 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
