ABOUT THIS RECORDspecies: Ictalurus punctatus
miRNA family: mir-1261
source: miRNEST
Taxonomy by NCBI:
Ictalurus punctatus Ictalurus Ictaluridae Siluriformes Siluriphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGAGAAGGCTTTGGCTAAC miRNA* TGGACAGAGCTCGCTCCCTCA mismatches: 4 bulges: 0 |
pre-miRNA
CTCACCACTGCTCAGGAAGTGTTGGACAGAGCTCGCTCCCTCATGACCCCTAAGATGGAGAAGGCTTTGGCTAACATGGCCTTAAAAACAGCAG
dot-bracket secondary structure
.......(((((.(((..(((((((.(((((((..((((.((.((.....)).)).))))..))))))).)))))))..))).......)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCACCACTGCTCAGGAAGTGTTGGACAGAGCTCGCTCCCTCATGACCCCTAAGATGGAGAAGGCTTTGGCTAACATGGCCTTAAAAACAGCAG
dot-bracket secondary structure
.......(((((.(((..(((((((.(((((((..((((.((.((.....)).)).))))..))))))).)))))))..))).......)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9I9A7|CDT1_XENLA: 0.0000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
