ABOUT THIS RECORDspecies: Ovis aries
miRNA family: mir-219
source: miRNEST
Taxonomy by NCBI:
Ovis aries Ovis Caprinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGTCCAAACGCAATTCT miRNA* AATTGTGGCTGGACATCTGT mismatches: 3 bulges: 1 |
pre-miRNA
GGCTTCGCCACTGATTGTCCAAACGCAATTCTTGTACGAGTCTGCGGCCAACCGAGAATTGTGGCTGGACATCTGTGGCTGAGC
dot-bracket secondary structure
.((((.(((((.(((.(((((..(((((((((((..((......))......)))))))))))..)))))))).))))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGCTTCGCCACTGATTGTCCAAACGCAATTCTTGTACGAGTCTGCGGCCAACCGAGAATTGTGGCTGGACATCTGTGGCTGAGC
dot-bracket secondary structure
.((((.(((((.(((.(((((..(((((((((((..((......))......)))))))))))..)))))))).))))).))))
SIMILARITIES| miRBase eca-mir-219-2: 2e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-219: 1e-34 | most similar mature miRNAs |
Identical with: ppy-mir-219-2 from miRBase (MNEST030915) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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