ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-296
source: miRNEST
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGGGTTGGGCGGAGCCTCTG miRNA* GGGGCCCGTCATCACCTTCCT mismatches: 3 bulges: 2 |
pre-miRNA
GCGCGGCCAAGGGGCCCGTCATCACCTTCCTGGACGCTCATATTGAGTGCACAGAGGGTTGGGCGGAGCCTCTGTTGGCAA
dot-bracket secondary structure
.....(((((((((((((((...((((((.((..((((((...))))))..))))))))..))))).))))))..))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGCGGCCAAGGGGCCCGTCATCACCTTCCTGGACGCTCATATTGAGTGCACAGAGGGTTGGGCGGAGCCTCTGTTGGCAA
dot-bracket secondary structure
.....(((((((((((((((...((((((.((..((((((...))))))..))))))))..))))).))))))..))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q6UE39|GLT13_RAT: 0.00003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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