ABOUT THIS RECORDspecies: Oncorhynchus mykiss
miRNA family: mir-202
source: miRNEST
Taxonomy by NCBI:
Oncorhynchus mykiss Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCTATGCATATACCTCTTT miRNA* AGAGGCATAGGGCATGGGAAAA mismatches: 2 bulges: 1 |
pre-miRNA
GCTGTTCCTTTTTCCTATGCATATACCTCTTTGAGATCTAGCTTTAAAGAGGCATAGGGCATGGGAAAATGGGGCTG
dot-bracket secondary structure
...(((((.(((((((((((.(((.((((((((((.......)))))))))).)))..))))))))))).)))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCTGTTCCTTTTTCCTATGCATATACCTCTTTGAGATCTAGCTTTAAAGAGGCATAGGGCATGGGAAAATGGGGCTG
dot-bracket secondary structure
...(((((.(((((((((((.(((.((((((((((.......)))))))))).)))..))))))))))).)))))..
SIMILARITIES| miRBase dre-mir-202: 5e-27 PMRD no hits microPC no hits | UniProt no hits RFAM mir-202: 3e-25 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
