miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST007217
species: Oncorhynchus mykiss
miRNA family: mir-202
source: miRNEST

Taxonomy by NCBI:
Oncorhynchus mykiss Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCCTATGCATATACCTCTTT

miRNA*
AGAGGCATAGGGCATGGGAAAA

mismatches: 2
bulges: 1

View larger
pre-miRNA
GCTGTTCCTTTTTCCTATGCATATACCTCTTTGAGATCTAGCTTTAAAGAGGCATAGGGCATGGGAAAATGGGGCTG

dot-bracket secondary structure
...(((((.(((((((((((.(((.((((((((((.......)))))))))).)))..))))))))))).)))))..


SIMILARITIES
miRBase dre-mir-202: 5e-27

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-202: 3e-25
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;