miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST007219
species: Oncorhynchus mykiss
miRNA family: miR-1952
source: miRNEST

Taxonomy by NCBI:
Oncorhynchus mykiss Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTCCACCATCCTTCTGGTCA

miRNA*
ACTGGAAGGAGCTGTGGATAGA

mismatches: 5
bulges: 1

View larger
pre-miRNA
AAGTGCCAGTCGGACTGGAAGGAGCTGTGGATAGAAGATGCCTTCTGGCGGTTCCTCTTCTCCACCATCCTTCTGGTCATCATGTTCCT

dot-bracket secondary structure
............(((((((((((...(((((.(((.((.(((....)))...)).)))..)))))..)))))))))))...........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q8BKU8|TM87B_MOUSE: 0.00000002

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;