ABOUT THIS RECORDspecies: Oncorhynchus mykiss
miRNA family: mir-126
source: miRNEST
Taxonomy by NCBI:
Oncorhynchus mykiss Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGTACCGTGAGTAATAATGC miRNA* ATTATTACTTTTGGTACTCTC mismatches: 4 bulges: 0 |
pre-miRNA
CTTTACGGTCCATTATTACTTTTGGTACTCTCTAGGCCAGTCTCAAACTCGTACCGTGAGTAATAATGCACTGTGGC
dot-bracket secondary structure
..(((((((.(((((((((((.((((((......................)))))).))))))))))).))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTTACGGTCCATTATTACTTTTGGTACTCTCTAGGCCAGTCTCAAACTCGTACCGTGAGTAATAATGCACTGTGGC
dot-bracket secondary structure
..(((((((.(((((((((((.((((((......................)))))).))))))))))).))))))).
SIMILARITIES| miRBase dre-mir-126a: 5e-27 PMRD no hits microPC no hits | UniProt no hits RFAM mir-126: 3e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
