ABOUT THIS RECORDspecies: Oncorhynchus mykiss
miRNA family: mir-379
source: miRNEST
Taxonomy by NCBI:
Oncorhynchus mykiss Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATGTAGTATGGTCCAAATCT miRNA* GTTGGAGACCATGCTCATGAA mismatches: 3 bulges: 2 |
pre-miRNA
ATCACAGGCTCAATGTAGTATGGTCCAAATCTCCTCTCATACAGCAGGTTGGAGACCATGCTCATGAATGTCTTGG
dot-bracket secondary structure
.....((((...(((.(((((((((..(((((.((.......)).)))))...))))))))))))....))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCACAGGCTCAATGTAGTATGGTCCAAATCTCCTCTCATACAGCAGGTTGGAGACCATGCTCATGAATGTCTTGG
dot-bracket secondary structure
.....((((...(((.(((((((((..(((((.((.......)).)))))...))))))))))))....))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|O73817|PSB3_ONCMY: 0.0000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
