ABOUT THIS RECORDspecies: Gasterosteus aculeatus
miRNA family: miR-3533
source: miRNEST
Taxonomy by NCBI:
Gasterosteus aculeatus Gasterosteus Gasterosteidae Gasterosteiformes Gasterosteiformes/Syngnathiformes group Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAAGTGTGATGTTGACATC miRNA* AGTCATGTGGCATTCATGA mismatches: 2 bulges: 2 |
pre-miRNA
TCTTGGGTATGGAGTCATGTGGCATTCATGAGACGGTCTACAACTCCATCATGAAGTGTGATGTTGACATCAGAAAAGAC
dot-bracket secondary structure
((((.....(((.(((((((.((((((((((...(((.....)))...))))))).))).))).)))).)))...)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCTTGGGTATGGAGTCATGTGGCATTCATGAGACGGTCTACAACTCCATCATGAAGTGTGATGTTGACATCAGAAAAGAC
dot-bracket secondary structure
((((.....(((.(((((((.((((((((((...(((.....)))...))))))).))).))).)))).)))...)))).
SIMILARITIES| miRBase gga-mir-3533: 0.00000002 PMRD no hits microPC no hits | UniProt sp|O16808|ACT_MAYDE: 0.00000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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