ABOUT THIS RECORDspecies: Gasterosteus aculeatus
miRNA family: mir-31
source: miRNEST
Taxonomy by NCBI:
Gasterosteus aculeatus Gasterosteus Gasterosteidae Gasterosteiformes Gasterosteiformes/Syngnathiformes group Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAAGATGTTGGCATAGCTG miRNA* GCTATATCAACATATTGCCAT mismatches: 4 bulges: 0 |
pre-miRNA
AACCATGGGTCCAGGAAGGAAGGCAAGATGTTGGCATAGCTGTTAAATTGAAATCCCTGCTATATCAACATATTGCCATTTTTCTCTCCCCCTTTGC
dot-bracket secondary structure
...((.(((....(((((((.(((((.(((((((.(((((..((......))......))))).))))))).))))).)))))))....)))..)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACCATGGGTCCAGGAAGGAAGGCAAGATGTTGGCATAGCTGTTAAATTGAAATCCCTGCTATATCAACATATTGCCATTTTTCTCTCCCCCTTTGC
dot-bracket secondary structure
...((.(((....(((((((.(((((.(((((((.(((((..((......))......))))).))))))).))))).)))))))....)))..)).
SIMILARITIES| miRBase mdo-mir-31: 0.000000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-31: 8e-39 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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