ABOUT THIS RECORDspecies: Pimephales promelas
miRNA family: mir-205
source: miRNEST
Taxonomy by NCBI:
Pimephales promelas Pimephales Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTTCATTCCACCGGAGTCT miRNA* ATTTCAGTGGTGTGAAGTGTA mismatches: 3 bulges: 0 |
pre-miRNA
TAAAGATGTTTTATCTGCTCTGTGAATTCTATCCTTCATTCCACCGGAGTCTGTGTAGCTGTCCAATCAGATTTCAGTGGTGTGAAGTGTAGGAGACATG
GAAAGATCTCATCACCTTC
dot-bracket secondary structure
....((((....((((..((((((..((((((.((((((.((((.((((((((..............)))))))).)))).)))))).))))))..))))
)).))))..))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAAGATGTTTTATCTGCTCTGTGAATTCTATCCTTCATTCCACCGGAGTCTGTGTAGCTGTCCAATCAGATTTCAGTGGTGTGAAGTGTAGGAGACATG
GAAAGATCTCATCACCTTC
dot-bracket secondary structure
....((((....((((..((((((..((((((.((((((.((((.((((((((..............)))))))).)))).)))))).))))))..))))
)).))))..))))......
SIMILARITIES| miRBase dre-mir-205: 8e-30 PMRD no hits microPC no hits | UniProt no hits RFAM mir-205: 1e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
