ABOUT THIS RECORDspecies: Aplysia californica
miRNA family: miR-526a
source: miRNEST
Taxonomy by NCBI:
Aplysia californica Aplysia Aplysiidae Aplysioidea Aplysiomorpha Opisthobranchia Euthyneura Heterobranchia Apogastropoda Orthogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGTTGAGGGGAGCACTTTCA miRNA* GAAGTGCTCATGGTTCAACAGTG mismatches: 4 bulges: 2 |
pre-miRNA
GACCAGGAATAGAGAAGTGCTCATGGTTCAACAGTGTGTTATGCTATTATACTTTTACAACTTTGTGGCACCCACAATAAAATGTGTTAGCTCTTTGAGA
AGGGGCAATCTGGTCTTTTAACAACGCTTGAAAATGTACTGTTGAGGGGAGCACTTTCAAAAACAAAGA
dot-bracket secondary structure
.............(((((((((....(((((((((((((((.((((.((((.(((.......((((((...)))))).))).)))).)))).....((((
.(((....)))..)))).))))).............))))))))))..)))))))))............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
GACCAGGAATAGAGAAGTGCTCATGGTTCAACAGTGTGTTATGCTATTATACTTTTACAACTTTGTGGCACCCACAATAAAATGTGTTAGCTCTTTGAGA
AGGGGCAATCTGGTCTTTTAACAACGCTTGAAAATGTACTGTTGAGGGGAGCACTTTCAAAAACAAAGA
dot-bracket secondary structure
.............(((((((((....(((((((((((((((.((((.((((.(((.......((((((...)))))).))).)))).)))).....((((
.(((....)))..)))).))))).............))))))))))..)))))))))............
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
