ABOUT THIS RECORDspecies: Aplysia californica
miRNA family: miR-1
source: miRNEST
Taxonomy by NCBI:
Aplysia californica Aplysia Aplysiidae Aplysioidea Aplysiomorpha Opisthobranchia Euthyneura Heterobranchia Apogastropoda Orthogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACATACTTCTTTACATTCCA miRNA* GGATAGCAAAGAAGTATGTTAC mismatches: 3 bulges: 1 |
pre-miRNA
GTTGACTTGTCTGGCACACGATACATACTTCTTTACATTCCATAGCTTGAGCGTAATATGGGATAGCAAAGAAGTATGTTACGTGCACCAGCACATTTCT
dot-bracket secondary structure
...((..(((((((..((((..((((((((((((..((((((((............))))))))...))))))))))))..))))..)))).)))..)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTGACTTGTCTGGCACACGATACATACTTCTTTACATTCCATAGCTTGAGCGTAATATGGGATAGCAAAGAAGTATGTTACGTGCACCAGCACATTTCT
dot-bracket secondary structure
...((..(((((((..((((..((((((((((((..((((((((............))))))))...))))))))))))..))))..)))).)))..)).
SIMILARITIES| miRBase tgu-mir-1-1: 0.000000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 0.00000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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