ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR838
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTCTTCTACTTCTTCCAAG miRNA* TGGAACGTAAGTAGACGAAGGGG mismatches: 3 bulges: 2 |
pre-miRNA
CAAATTGGAACGTAAGTAGACGAAGGGGCGGATGTAGCCAAGTCAATCAAGGCAGGAATCAAATTTTGTAAAATCGAAGAACTAAATTCAACTTCCTCTC
CTATTCACTACGAAACGAAGAATACCACTATATCTTTTCTTTCTTCTACTTCTTCCAAGTG
dot-bracket secondary structure
....((((((...(((((((.(((((((.((((((((.....((..((.(((.(((((...(((((.((...........)).)))))....)))))..)
)).(((.....)))..)).))......)))))))).))))))).))))))).))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAAATTGGAACGTAAGTAGACGAAGGGGCGGATGTAGCCAAGTCAATCAAGGCAGGAATCAAATTTTGTAAAATCGAAGAACTAAATTCAACTTCCTCTC
CTATTCACTACGAAACGAAGAATACCACTATATCTTTTCTTTCTTCTACTTCTTCCAAGTG
dot-bracket secondary structure
....((((((...(((((((.(((((((.((((((((.....((..((.(((.(((((...(((((.((...........)).)))))....)))))..)
)).(((.....)))..)).))......)))))))).))))))).))))))).))))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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