ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIRf953
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTATCAGGACATCCAGCCCAA miRNA* CGGTGGAAGATTTTGATACAC mismatches: 3 bulges: 2 |
pre-miRNA
GATATTCAGATTCGGTGGAAGATTTTGATACACGATCTTGCTTTCTTGCTCTTCCAAGGATATTAAGGAATCTCCAAGAAACATGCACCAACCCGTGAAC
GGACGACGAGTATCAGGACATCCAGCCCAATCAGAATCA
dot-bracket secondary structure
...((((.((((.((((((...(((((((((.((.((.((((((((((...((((...........))))....)))))))...))).....(((....)
))..)))).)))))))))..)))).)).)))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATATTCAGATTCGGTGGAAGATTTTGATACACGATCTTGCTTTCTTGCTCTTCCAAGGATATTAAGGAATCTCCAAGAAACATGCACCAACCCGTGAAC
GGACGACGAGTATCAGGACATCCAGCCCAATCAGAATCA
dot-bracket secondary structure
...((((.((((.((((((...(((((((((.((.((.((((((((((...((((...........))))....)))))))...))).....(((....)
))..)))).)))))))))..)))).)).)))).))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P92519|M810_ARATH: 0.00001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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