ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: miR157d
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCTCTATGCTTCTGTCATC miRNA* TGACAGAAGATAGAGAGCAC mismatches: 1 bulges: 1 |
pre-miRNA
TATTGATAGGAAGAAAGGTTGGTGATAATTGTTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAGCAAAAGCATCTCACTTCATTTG
TGCTCTCTATGCTTCTGTCATCACCTTCGCCCTCTTTCGTTTTTTCTTTT
dot-bracket secondary structure
)...((.((((.((((((..(((((....((.((((((((((((((((((((.((((((((.(((((................))))).)))..))))).)
)))))))))).))))))))).))...))))).)))))).)))).))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATTGATAGGAAGAAAGGTTGGTGATAATTGTTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAGCAAAAGCATCTCACTTCATTTG
TGCTCTCTATGCTTCTGTCATCACCTTCGCCCTCTTTCGTTTTTTCTTTT
dot-bracket secondary structure
)...((.((((.((((((..(((((....((.((((((((((((((((((((.((((((((.(((((................))))).)))..))))).)
)))))))))).))))))))).))...))))).)))))).)))).))....
SIMILARITIES| miRBase sly-MIR156a: 3.0E-30 PMRD stu-miR157a: 2.0E-46 microPC miR157: 8.0E-46 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR157 from microPC (MNEST045968), stu-miR157a from PMRD , miR157 from microPC , miR156 from microPC |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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